Re: [netcdfgroup] Difficulties building ncks-4.0.1 and cdo-1.4.4 against netCDF-4.1.1

[Jennifer Adams <jma@xxxxxxxxxxxxx>]

Here are the environment variables I had to set, the configure command  
I used, and one additional change to the nco config.h file to get it  
to compile on CentOS 64bit (gcc 4.1.2). I should add that some of  
these commands are tailored to the way I built hdf5 and netcdf4. It  
seems so kludgey, but it worked. I haven't tried with nco-4.0.1.

setenv CPPFLAGS -I/path_to_netcdf-4.1.1/include
setenv NETCDF4_ROOT /path_to_netcdf-4.1.1
setenv HDF5_LIB_DIR /path_to_hdf5-1.8.4-patch1
setenv LIBS "-L/path_to_netcdf-4.1.1-rc2/lib -lnetcdf \
-L/path_to_hdf5-1.8.4-patch1/lib -lhdf5_hl -lhdf5 \
-L/path_to_zlib/lib -lz -lm \
/path_to_szip-2.1/lib/libsz.a \
/path_to_curl-7.19.6/lib/libcurl.a \
-lrt -lz"

./configure --prefix=/path_to_nco-4.0.0 --enable-netcdf4 --disable- 
shared --enable-static

Also added:
#define HAVE_NETCDF4_H 1
to config.h

I hope this helps!
--Jennifer



On May 24, 2010, at 2:22 PM, David Pierce wrote:

> Hi Gary,
>
> I ran into the multiple definitions problem as well.  Not wanting to  
> spend
> time messing with it, I simply commented out the redundant  
> definitions in
> the nco source code (the make error messages show the file and line
> numbers) and that worked.   This is on a Ubundu 8.04 LTS x64 system.
>
> Regards,
>
> --Dave
>
>
> Gary Strand wrote:
> > I'm having significant problems getting nco-4.0.1 and cdo-1.4.4 to
> > build against netCDF-4.1.1/hdf5-1.8.4patch1 on a reasonably generic
> > Linux 64-bit system.
> >
> > 'nco' reports many multiple definitions during 'make'; 'cdo' fails on
> > 'configure' because it can't find 'nc_open'.
> >
> > Does anyone have any hints/suggestions as to get past these problems?
> >
> > Thanks!
> >
> > Gary Strand
> > strandwg@xxxxxxxx
> >
> >
> >
> > _______________________________________________
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>
>
> -------------------------------------------------------------------
> David W. Pierce
> Division of Climate, Atmospheric Science, and Physical Oceanography
> Scripps Institution of Oceanography
> (858) 534-8276 (voice)  /  (858) 534-8561 (fax)    dpierce@xxxxxxxx
> -------------------------------------------------------------------
>
>
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> For list information or to unsubscribe,  visit: 
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--
Jennifer M. Adams
IGES/COLA
4041 Powder Mill Road, Suite 302
Calverton, MD 20705
jma@xxxxxxxxxxxxx