configure: netCDF 4.4.0 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: checking user options checking whether a win32 DLL is desired... no checking whether a NCIO_MINBLOCKSIZE was specified... 256 checking if fsync support is enabled... no checking if jna bug workaround is enabledd... no checking whether extra valgrind tests should be run... no checking whether we should build netCDF-4... yes checking do we require hdf5 dynamic-loading support... yes checking whether reading of HDF4 SD files is to be enabled... no checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... yes checking whether extra example tests should be run... no checking whether parallel IO tests should be run... no checking whether a default chunk size in bytes was specified... 4194304 checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 checking whether a number of chunks for the default per-variable cache was specified... 10 checking whether a default file cache size for HDF5 was specified... 4194304 checking whether a default file cache maximum number of elements for HDF5 was specified... 1009 checking whether a default cache preemption for HDF5 was specified... 0.75 checking whether netCDF-4 logging is enabled... no checking whether DAP client is to be built... yes checking for style of include used by make... GNU checking for gcc... mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking whether mpicc understands -c and -o together... yes checking dependency style of mpicc... pgcc checking for curl_easy_setopt in -lcurl... yes checking for library containing curl_easy_setopt... -lcurl checking whether dap remote testing should be enabled (default on)... yes checking whether dap remote authorization testing should be enabled (default off)... no checking whether netcdf4 group names should be enabled (default on)... yes checking whether the time-consuming dap tests should be enabled (default off)... no checking whether netCDF extra tests should be run (developers only)... no checking whether FFIO will be used... no checking whether STDIO will be used... no checking whether examples should be built... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump/nccopy should be built... yes checking whether test should be built and run... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmarks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . configure: finding C compiler checking for gcc... (cached) mpicc checking whether we are using the GNU C compiler... (cached) no checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ISO C89... (cached) none needed checking whether mpicc understands -c and -o together... (cached) yes checking dependency style of mpicc... (cached) pgcc checking for an ANSI C-conforming const... yes checking whether CURLOPT_USERNAME is defined... yes checking whether CURLOPT_PASSWORD is defined... yes checking whether CURLOPT_KEYPASSWD is defined... yes checking whether CURLINFO_RESPONSE_CODE is defined... yes checking whether CURLOPT_CHUNK_BGN_FUNCTION is defined... no configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for non-GNU ld... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking for mpicc option to produce PIC... -DPIC checking if mpicc PIC flag -DPIC works... yes checking if mpicc static flag works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: finding other utilities checking for m4... m4 checking for doxygen... no checking for dot... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... -I/home/brownm12/deq/CMAS/br/hdf5/build/hdf5/include -I/opt/apps/pgi13_8/szip/2.1/include -I/home/brownm12/deq/CMAS/br/pnetcdf/install/include checking CC CFLAGS... mpicc -g checking type mpicc... mpicc is /opt/apps/pgi13_8/mvapich2/1.9a2/bin/mpicc checking CXX... mpicxx checking CXXFLAGS... checking type mpicxx... mpicxx is /opt/apps/pgi13_8/mvapich2/1.9a2/bin/mpicxx checking FC... mpif90 checking FFLAGS... checking type mpif90... mpif90 is /opt/apps/pgi13_8/mvapich2/1.9a2/bin/mpif90 checking F90... mpif90 checking FCFLAGS... checking type mpif90... mpif90 is /opt/apps/pgi13_8/mvapich2/1.9a2/bin/mpif90 checking AR... ar checking AR_FLAGS... cru checking type ar... ar is /usr/bin/ar checking NM... /usr/bin/nm -B checking NMFLAGS... configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking whether time.h and sys/time.h may both be included... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for vprintf... yes checking for _doprnt... no checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for strlcat... no checking for strerror... yes checking for snprintf... yes checking for strchr... yes checking for strrchr... yes checking for strcat... yes checking for strcpy... yes checking for strdup... yes checking for strcasecmp... yes checking for strtod... yes checking for strtoll... yes checking for strtoull... yes checking for strstr... yes checking for mkstemp... yes checking for rand... yes checking for memcmp... yes checking for getrlimit... yes checking for gettimeofday... yes checking for fsync... yes checking for MPI_Comm_f2c... no checking whether in-memory files are enabled... yes configure: --enable-dap requires --enable-diskless configure: dap support disabled checking for memmove... yes checking for getpagesize... yes checking for sysconf... yes checking whether mmap is enabled for in-memory files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getpagesize... (cached) yes checking for working mmap... yes checking for mremap... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether signbit is declared... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... (cached) yes checking for off_t... yes checking for size_t... (cached) yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking for longlong... no checking for ushort... yes checking for uint... yes checking for int64... no checking for uint64... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 checking size of unsigned long long... 8 checking size of ushort... 2 checking size of uint... 4 checking size of unsigned long long... (cached) 8 checking size of ushort... (cached) 2 checking size of uint... (cached) 4 checking size of ptrdiff_t... 8 checking for library containing deflate... none required checking for floor in -lm... yes checking for dlfcn.h... (cached) yes checking for dlopen in -ldl... yes checking for library containing H5Fflush... -lhdf5 checking for library containing H5DSis_scale... -lhdf5_hl checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Pget_fapl_mpiposix... no checking for H5Pget_fapl_mpio... yes checking for H5Pset_deflate... yes checking for H5Z_SZIP... no checking for H5free_memory... yes checking whether parallel io is enabled in hdf5... yes checking whether parallel I/O is enabled for netcdf-4... yes checking whether parallel I/O for classic files is to be enabled... yes checking for ncmpi_create in -lpnetcdf... yes checking Is libpnetcdf version 1.6.0 or later?... yes checking for unsigned long long int... yes checking for long long int... yes checking for unsigned long long int... (cached) yes checking what to call the output of the ftpbin target... binary-netcdf-4.4.0.tar mpif90 mpicxx checking if libtool needs -no-undefined flag to build shared libraries... no checking value of LIBS... -lpnetcdf -lhdf5_hl -lhdf5 -ldl -lm -lcurl checking If compilation is for use with JNA... no configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating nc-config config.status: creating netcdf.pc config.status: creating libnetcdf.settings config.status: creating postinstall.sh config.status: creating include/netcdf_meta.h config.status: creating include/Makefile config.status: creating h5_test/Makefile config.status: creating docs/Makefile config.status: creating docs/images/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating libsrcp/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen3/Makefile config.status: creating ncgen/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating oc2/Makefile config.status: creating libdap2/Makefile config.status: creating libdispatch/Makefile config.status: creating liblib/Makefile config.status: creating ncdump/cdl/Makefile config.status: creating ncdump/expected/Makefile config.status: creating ncdap_test/Makefile config.status: creating ncdap_test/testdata3/Makefile config.status: creating ncdap_test/expected3/Makefile config.status: creating ncdap_test/expected4/Makefile config.status: creating ncdap_test/expectremote3/Makefile config.status: creating ncdap_test/expectremote4/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands # NetCDF C Configuration Summary ============================== # General ------- NetCDF Version: 4.4.0 Configured On: Wed Jul 6 15:00:13 EDT 2016 Host System: x86_64-unknown-linux-gnu Build Directory: /home/brownm12/deq/CMAS/br/netcdf/build2 Install Prefix: /home/brownm12/deq/CMAS/br/netcdf/install/netcdf-4.4.0 # Compiling Options ----------------- C Compiler: /opt/apps/pgi13_8/mvapich2/1.9a2/bin/mpicc CFLAGS: -g CPPFLAGS: -I/home/brownm12/deq/CMAS/br/hdf5/build/hdf5/include -I/opt/apps/pgi13_8/szip/2.1/include -I/home/brownm12/deq/CMAS/br/pnetcdf/install/include LDFLAGS: -L/home/brownm12/deq/CMAS/br/hdf5/build/hdf5/lib -L/opt/apps/pgi13_8/szip/2.1/lib -L/home/brownm12/deq/CMAS/br/pnetcdf/install/lib AM_CFLAGS: AM_CPPFLAGS: AM_LDFLAGS: Shared Library: no Static Library: yes Extra libraries: -lpnetcdf -lhdf5_hl -lhdf5 -ldl -lm -lcurl # Features -------- NetCDF-2 API: yes HDF4 Support: no NetCDF-4 API: yes NC-4 Parallel Support: yes PNetCDF Support: yes DAP Support: yes Diskless Support: yes MMap Support: no JNA Support: no